Primer: Drug Discovery

These posts, tagged “Primer,” are posted for two reasons: 1). to help me get better at teaching non-scientists about science-related topics; and 2). to help non-scientists learn more about things they otherwise would not.  So, while I realize most people won’t read these, I’m going to write them anyway, partially for my own benefit, but mostly for yours.

There are a few ways to approach the general idea of drug discovery, but I’m going to try and tackle it from the historical treatment first, and maybe revisit it in a future Primer.  I am part of the Division of Medicinal and Natural Products Chemistry at the University of Iowa, and the two components of it, Medicinal Chemistry, and Natural Products, are both integral to the idea of developing new drugs.  Medicinal Chemistry is just as it sounds: the study of designing and synthesizing new drugs, using principles of chemistry, pharmacology and biology.  The idea of Natural Products, however, is a bit more interesting in that, just as it sounds, it studies chemical compounds “developed” in other organisms that may be useful as drugs.

The oldest records tend to cite the ancient Chinese, the Hindus and the Mayans as cultures that employed various products as medicinal agents.  Emperor Shen Nung, in 2735 BC, compiled what could be considered as the first pharmacopeia, including antimalarial drug ch’ang shang, and also ma huang, from which ephedrine was isolated.  Ipecacuanha root was used in Brazil for treatment of dysentery and diarrhea, as it contained emetine.  South American Indians chewed coca leaves (containing cocaine) and used mushrooms (containing tryptamine) as hallucinagens.  Many different examples of drug use in ancient, and more modern cultures, can be pointed to as early forerunners of today’s drug industry.

However, it was the 19th and 20th centuries that really kick-started the trend, as this is when modern chemical and biological techniques started to take hold.  It was in the 19th century when pharmacognosy, the science that deals with medicinal products of plant, animal, or mineral origin, was replaced by physiological chemistry.  Because of this shift, products like morphine, emetine, quinine, caffeine and colchicine were all isolated from the plants that produced them, allowing for much purer, and more effective, products to be produced.  Advances in organic chemistry at the time really helped with the isolation, so these discoveries wouldn’t have been possible previously.

In today’s world, there are a few ways you can go and discover a new drug:

  1. Random screening of plant compounds
  2. Selection of groups of organisms by Family or Genus (i.e. if you know one plant that makes a compound, look for more compounds in a related plant)
  3. Chemotaxonomic approach investigating secondary metabolites (i.e. Drug A functions in your body, then is metabolized in your liver to Drug B, which also happens to be functional)
  4. Collection of species selected by databases
  5. Selection by an ethnomedical approach

I think the latter two are the most interesting, especially with a historic perspective.  With the latter, we’re talking about going into cultures (a la the movie “Medicine Man“) and learning about the plants that they use to cure certain ailments, then getting samples of those plants and figuring out what makes them effective.  It has been estimated that of 122 drugs of this type used worldwide from 94 different species, 72% can be traced back to ethnic groups that used them for generations.

The discovery of new drugs of this type is actually somewhat worrisome as these cultures die out or become integrated into what we’d consider “modern society.”  These old “medicine men” and “shamans” die before imparting their knowledge to a new generation and these kinds of treatments are lost.

The collection of species and formation of databases is interesting, and only more useful in recent history due to the advent of computers that can actually store and access all the information.  With this process, we’re talking about going into a rain forest, for example, and collecting every plant and insect species you can find, then running various genetic and proteomic screens on the cells of each plant and insect to see whether they produce anything interesting or respond to anything.  This process can involve thousands of species across a single square mile in a rain forest, necessitating a great deal of storage space for the samples themselves, but also computing power to allow other researchers the ability to search for information on that given species.

An example of a “screen” that one could carry out would be to grow bacteria around your plant or insect samples.  If you ever heard the story of penicillin, you’ll know that Alexander Fleming (1928) noticed that his culture of Staphlococcus bacteria stopped growing around some bread mold that had found its way into the culture.  From that bread mold, penicillin, was developed as our first antibiotic.  The same kind of principle can be applied here: mix your samples together and “see what happens.”  If anything interesting happens, you then continue investigating that sample until you isolate the compound that is doing that interesting thing.

The isolation of that “interesting compound” can be very tricky, however.  In many cases, a particular anticancer agent or antibacterial agent may be housed inside the cells of our plant species.  Getting that compound out may be difficult, as it could be associated with the plant so tightly that you have to employ a variety of separation techniques.  And even after you apply those techniques, what you are left with may be nonfunctional, as the compound may require the action of that plant itself to work properly (i.e. the compound you want may still need other components to work).  Even after you isolate the compound you want, in order to make it a viable drug, you have to be able to synthesize it, or something like it, chemically in a lab setting.  Preferably, on a massive scale so you can sell it relatively cheaply as a drug to the masses.  These processes can be daunting and costly.

So basically, it can be fascinating to discover new drugs, especially ones that were actually “discovered” thousands of years ago by cultures that have long since died out.  However, you may find that “discovering” the drug may be the easy part – mass producing the drug could be the most challenging aspect of the ordeal.

02.18.11 Dinner

I used to make Andy and his Sci-Fi Friday buddies dinner most weeks and I would make not-so-good for you stuff like fried chicken, homemade chips, and whatnot. Last Friday, I revisited this tradition with Maid Rites, fries, and cheesy broccoli.

02.16.11 Dinner

This was our belated Valentine’s dinner: tomato risotto with shrimp, wilted spinach salad, and bread. I liked that salad so much (who wouldn’t when the base of the dressing is bacon grease?) that we had it again the next night with the addition of chicken and a hard boiled egg!


Dessert was Pots de Creme. Even though I halved the recipe this time, I still couldn’t finish my serving.

Choices

Last year, my phone was due for an upgrade, but since Brooke was doing quite a bit more traveling around Cedar Rapids at the time, we opted to give her my upgrade so she could get a smartphone, the HTC Aria (AT&T).  Thus far, she’s been quite happy with this little Android device, a phone that browses the internet, includes a GPS, and accesses WiFi in a variety of venues, obviating the need for a ridiculously expensive data plan (the stock 200 MB/mo plan is $15 extra per month).  Also, this phone was a shade smaller than the iPhone and was much more comfortable for her to deal with.

March 17th, however, Brooke’s phone number will be eligible for an upgrade, meaning that it’s my turn to get a new phone.  Thus, as I’m known for doing (like my father, before me…), I’ve been researching the various possibilities that AT&T has to offer with regards to phones.  For a few years now, the plan has been to go with an iPhone, as the iOS platform has the programs I want and the games I want to play.  For these past few years, Android just hasn’t been able to compete on the software front with the lead that Apple had built with their iPhone system.

This has begun to change.  Quickly.

Now, more and more programs and games are going Android at the same time they go iOS, and many of the original programs that ran on iOS have been or are being ported over to Android.  Thus, recently, I began to reconsider my plan to go with iPhone.

The other nail in the iPhone’s proverbial coffin for me is the fact that the iPhone 3GS is $50 (cool!) and the iPhone 4 is $200 (less cool?).  The iPhone 5 isn’t out, and technically hasn’t been announced, but surely won’t be available until this summer at the soonest.  So, do I get the iPhone 4 this March for $200?  Or do I wait until the iPhone 5 comes out and get it for $200?  Or once the iPhone 5 comes out, get the reduced-price iPhone 4 for $100?  Decisions, decisions, decisions!

The decision, I think, has been made for me, and it’s called the HTC Inspire 4G.

The HTC Inspire 4G just came out for AT&T early this month for $99 with a contract renewal.  It’s essentially a rebranding of Sprint’s Evo 4G, but doesn’t have a front-facing camera or a stand on the back of the phone (for holding it up while you watch videos).  It’s bigger than Brooke’s Aria, although it’s the same brand and is set up very similarly with the user interface and overall construction.  As the name implies, it’s also the first Android-based AT&T phone to get onto their quasi-“4G” network, technical HSPA+, at least wherever the network is available.  It will be capable of taking on the true-“4G” network when it launches later this year, so this phone is pretty well future-proofed for $99.  Not bad.

Brooke and I went by the AT&T Store today in Cedar Rapids to check one out.  I was quite pleased with it, talked with the sales dude about my options with regards to this phone as well as other, comparable phones, and I decided to go ahead and get it.  I was less than 30 days from the upgrade date, so they waived it and let me upgrade early.

I’ve been playing with the phone for most of the day, as I typically do with new toys.  I’ve been pretty happy with it thus far, but will learn more about what the Android platform is capable in the coming days.  I still need to grab some kind of protective case for it, but those aren’t too hard to find.  Otherwise, I think I’ve got the user interface set up the way I want it, but am now trying different apps to see which ones I like for doing the things I want.

Of course, one of the benefits of going Android is the fact that it syncs up quite well with your Google account, so it pulls down my mail, calendar, RSS feeds, etc. from the interwebs with the click of a button.  Very efficient and very helpful for my purposes.  One of the other neat features about this particular phone is the HTC Sense connectivity with HTC’s website, allowing you to not only turn your phone from “silent” to “loud” from the website (in the event that you lose your phone), but also it can remotely wipe your phone of it’s memory (in the event your phone is stolen).  Neat!

Needless to say, I’m having a good time.  🙂

02.14.11 Dinner

This…

…prevented the nice Valentine’s Day dinner I had planned, so we had microwaved veal parmesan, peas and carrots, and egg noodles.

02.12.11 Dinner

My Mom and Dad came up to visit on Saturday, so I made lunch/dinner (linner? lupper?). Beer (our just-bottled Hefeweisen) and onion-braised brisket, smashed potatoes, green beans, and some defrosted multigrain bread.

Dessert was lemon-yogurt cake with berry sauce and whipped cream and chocolate-covered strawberries that my mom and I made. I’ve made that cake before and thought it was great, but it turned out a little tough this time. Not sure why, so I’ll probably give the recipe another try before I throw it out.

02.13.11 Dinner

We must have missed the pictures from Saturday’s dinner when my parents were visiting, but in an attempt to stay caught up before I start my new job tomorrow, here’s last night’s dinner: beef tortilla soup, thanks to my mom’s inspiration!

02.11.11 Dinner

Another standard: bacon, scrambled eggs, and biscuits. To amuse you and keep you coming back: Andy trying to get Meg to eat (unsuccessfully). And look!! We actually ate at the dining room table instead of the living room coffee table!!